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I tried subbing the folders and files back in, still didn't help. I've already restarted my world. I think it had to do with me doing file manipulations with the batch files to try and fix the horrendous glitch.
Oh well,
Game has officially broken for me. I was exploring the jellyshroom cave with my seamoth and I got out of it to swim around. I then noticed that my seamoth had entirely disappeared. So I quit and restarted to my previous save. But I saved after I got…